From safaramarziganjabad at ...14... Wed Nov 18 11:01:29 2015 From: safaramarziganjabad at ...14... (Sadegh Faramarzi Ganjabad) Date: Wed, 18 Nov 2015 11:01:29 -0500 Subject: [Sasview-users] SasView and Molecular Dynamics? Message-ID: Hello I was wondering whether I can use SasView to generate SAXS profile from structures I get from molecular dynamics. For example, if I have pdb file or pair distance distribution file, can I use it to generate a SAXS profile theoretically? Thanks -------------- next part -------------- An HTML attachment was scrubbed... URL: From niki.baccile at ...16... Mon Nov 30 13:58:09 2015 From: niki.baccile at ...16... (Niki BACCILE) Date: Mon, 30 Nov 2015 19:58:09 +0100 Subject: [Sasview-users] CoreShellBicelle Model help Message-ID: <20151130195809.12544x2l7l18j1us@...15...> Dear Users Can anyone provide some help on the CoreShellBicelle Model (1D version) developed in SasView and referring to the documentation below? http://www.sasview.org/docs/user/models/model_functions.html#coreshellbicellemodel The following is not clear to me: 1) It is said that that the CoreShellBicelle Model is developed on the basis of the CoreShell Cylinder. I suppose that what it means is that if one squeezes a cylinder in its length (Radius>>Length), one obtains a bicelle morphology from a cylinder. However, in the Bicelle standard parameters, it is the contrary, Length (400)>>Radius(20). Is this normal? 2) In the CoreShellCylinder model, the Shell surrounds the Core in the axial direction, parallel to the length of the cylinder, as shown in http://www.sasview.org/docs/user/models/model_functions.html#coreshellcylindermodel Now, if I "squeeze" the cylinder in its length to make it a bicelle, I suppose that the shell will then correspond to the Rim Thickness of the bicelle. Is this correct? Or I did not figure this out at all in the rigth way and the Shell of the cylinder actually corresponds to the Face Thickness? Thank you very much for your help. Niki ---------------------------------------------------------------- This message was sent using IMP, the Internet Messaging Program. From butlerpd at ...4... Mon Nov 30 20:56:24 2015 From: butlerpd at ...4... (Paul Butler) Date: Mon, 30 Nov 2015 20:56:24 -0500 Subject: [Sasview-users] CoreShellBicelle Model help In-Reply-To: <20151130195809.12544x2l7l18j1us@...15...> References: <20151130195809.12544x2l7l18j1us@...15...> Message-ID: In short, as I understand your questions the answer is yes. Actually there is no requirement that L>R. L is defined as along the axis and R is the radially symmetric dimension. Indeed with L>>R it would be considered a long rod while L wrote: > Dear Users > > Can anyone provide some help on the CoreShellBicelle Model (1D > version) developed in SasView and referring to the documentation below? > > > http://www.sasview.org/docs/user/models/model_functions.html#coreshellbicellemodel > > The following is not clear to me: > > 1) It is said that that the CoreShellBicelle Model is developed on the > basis of the CoreShell Cylinder. I suppose that what it means is that > if one squeezes a cylinder in its length (Radius>>Length), one obtains > a bicelle morphology from a cylinder. However, in the Bicelle standard > parameters, it is the contrary, Length (400)>>Radius(20). Is this > normal? > > > 2) In the CoreShellCylinder model, the Shell surrounds the Core in the > axial direction, parallel to the length of the cylinder, as shown in > > http://www.sasview.org/docs/user/models/model_functions.html#coreshellcylindermodel > > Now, if I "squeeze" the cylinder in its length to make it a bicelle, I > suppose that the shell will then correspond to the Rim Thickness of > the bicelle. Is this correct? Or I did not figure this out at all in > the rigth way and the Shell of the cylinder actually corresponds to > the Face Thickness? > > Thank you very much for your help. > > Niki > > ---------------------------------------------------------------- > This message was sent using IMP, the Internet Messaging Program. > > > > > ------------------------------------------------------------------------------ > Go from Idea to Many App Stores Faster with Intel(R) XDK > Give your users amazing mobile app experiences with Intel(R) XDK. > Use one codebase in this all-in-one HTML5 development environment. > Design, debug & build mobile apps & 2D/3D high-impact games for multiple > OSs. > http://pubads.g.doubleclick.net/gampad/clk?id=254741911&iu=/4140 > _______________________________________________ > Sasview-users mailing list > Sasview-users at lists.sourceforge.net > https://lists.sourceforge.net/lists/listinfo/sasview-users > -------------- next part -------------- An HTML attachment was scrubbed... URL: From butlerpd at ...4... Mon Nov 30 20:56:24 2015 From: butlerpd at ...4... (Paul Butler) Date: Mon, 30 Nov 2015 20:56:24 -0500 Subject: [Sasview-users] CoreShellBicelle Model help In-Reply-To: <20151130195809.12544x2l7l18j1us@...15...> References: <20151130195809.12544x2l7l18j1us@...15...> Message-ID: In short, as I understand your questions the answer is yes. Actually there is no requirement that L>R. L is defined as along the axis and R is the radially symmetric dimension. Indeed with L>>R it would be considered a long rod while L wrote: > Dear Users > > Can anyone provide some help on the CoreShellBicelle Model (1D > version) developed in SasView and referring to the documentation below? > > > http://www.sasview.org/docs/user/models/model_functions.html#coreshellbicellemodel > > The following is not clear to me: > > 1) It is said that that the CoreShellBicelle Model is developed on the > basis of the CoreShell Cylinder. I suppose that what it means is that > if one squeezes a cylinder in its length (Radius>>Length), one obtains > a bicelle morphology from a cylinder. However, in the Bicelle standard > parameters, it is the contrary, Length (400)>>Radius(20). Is this > normal? > > > 2) In the CoreShellCylinder model, the Shell surrounds the Core in the > axial direction, parallel to the length of the cylinder, as shown in > > http://www.sasview.org/docs/user/models/model_functions.html#coreshellcylindermodel > > Now, if I "squeeze" the cylinder in its length to make it a bicelle, I > suppose that the shell will then correspond to the Rim Thickness of > the bicelle. Is this correct? Or I did not figure this out at all in > the rigth way and the Shell of the cylinder actually corresponds to > the Face Thickness? > > Thank you very much for your help. > > Niki > > ---------------------------------------------------------------- > This message was sent using IMP, the Internet Messaging Program. > > > > > ------------------------------------------------------------------------------ > Go from Idea to Many App Stores Faster with Intel(R) XDK > Give your users amazing mobile app experiences with Intel(R) XDK. > Use one codebase in this all-in-one HTML5 development environment. > Design, debug & build mobile apps & 2D/3D high-impact games for multiple > OSs. > http://pubads.g.doubleclick.net/gampad/clk?id=254741911&iu=/4140 > _______________________________________________ > Sasview-users mailing list > Sasview-users at lists.sourceforge.net > https://lists.sourceforge.net/lists/listinfo/sasview-users > -------------- next part -------------- An HTML attachment was scrubbed... URL: From safaramarziganjabad at ...14... Wed Nov 18 11:01:29 2015 From: safaramarziganjabad at ...14... (Sadegh Faramarzi Ganjabad) Date: Wed, 18 Nov 2015 11:01:29 -0500 Subject: [Sasview-users] SasView and Molecular Dynamics? Message-ID: Hello I was wondering whether I can use SasView to generate SAXS profile from structures I get from molecular dynamics. For example, if I have pdb file or pair distance distribution file, can I use it to generate a SAXS profile theoretically? Thanks -------------- next part -------------- An HTML attachment was scrubbed... URL: From niki.baccile at ...16... Mon Nov 30 13:58:09 2015 From: niki.baccile at ...16... (Niki BACCILE) Date: Mon, 30 Nov 2015 19:58:09 +0100 Subject: [Sasview-users] CoreShellBicelle Model help Message-ID: <20151130195809.12544x2l7l18j1us@...15...> Dear Users Can anyone provide some help on the CoreShellBicelle Model (1D version) developed in SasView and referring to the documentation below? http://www.sasview.org/docs/user/models/model_functions.html#coreshellbicellemodel The following is not clear to me: 1) It is said that that the CoreShellBicelle Model is developed on the basis of the CoreShell Cylinder. I suppose that what it means is that if one squeezes a cylinder in its length (Radius>>Length), one obtains a bicelle morphology from a cylinder. However, in the Bicelle standard parameters, it is the contrary, Length (400)>>Radius(20). Is this normal? 2) In the CoreShellCylinder model, the Shell surrounds the Core in the axial direction, parallel to the length of the cylinder, as shown in http://www.sasview.org/docs/user/models/model_functions.html#coreshellcylindermodel Now, if I "squeeze" the cylinder in its length to make it a bicelle, I suppose that the shell will then correspond to the Rim Thickness of the bicelle. Is this correct? Or I did not figure this out at all in the rigth way and the Shell of the cylinder actually corresponds to the Face Thickness? Thank you very much for your help. Niki ---------------------------------------------------------------- This message was sent using IMP, the Internet Messaging Program. From butlerpd at ...4... Mon Nov 30 20:56:24 2015 From: butlerpd at ...4... (Paul Butler) Date: Mon, 30 Nov 2015 20:56:24 -0500 Subject: [Sasview-users] CoreShellBicelle Model help In-Reply-To: <20151130195809.12544x2l7l18j1us@...15...> References: <20151130195809.12544x2l7l18j1us@...15...> Message-ID: In short, as I understand your questions the answer is yes. Actually there is no requirement that L>R. L is defined as along the axis and R is the radially symmetric dimension. Indeed with L>>R it would be considered a long rod while L wrote: > Dear Users > > Can anyone provide some help on the CoreShellBicelle Model (1D > version) developed in SasView and referring to the documentation below? > > > http://www.sasview.org/docs/user/models/model_functions.html#coreshellbicellemodel > > The following is not clear to me: > > 1) It is said that that the CoreShellBicelle Model is developed on the > basis of the CoreShell Cylinder. I suppose that what it means is that > if one squeezes a cylinder in its length (Radius>>Length), one obtains > a bicelle morphology from a cylinder. However, in the Bicelle standard > parameters, it is the contrary, Length (400)>>Radius(20). Is this > normal? > > > 2) In the CoreShellCylinder model, the Shell surrounds the Core in the > axial direction, parallel to the length of the cylinder, as shown in > > http://www.sasview.org/docs/user/models/model_functions.html#coreshellcylindermodel > > Now, if I "squeeze" the cylinder in its length to make it a bicelle, I > suppose that the shell will then correspond to the Rim Thickness of > the bicelle. Is this correct? Or I did not figure this out at all in > the rigth way and the Shell of the cylinder actually corresponds to > the Face Thickness? > > Thank you very much for your help. > > Niki > > ---------------------------------------------------------------- > This message was sent using IMP, the Internet Messaging Program. > > > > > ------------------------------------------------------------------------------ > Go from Idea to Many App Stores Faster with Intel(R) XDK > Give your users amazing mobile app experiences with Intel(R) XDK. > Use one codebase in this all-in-one HTML5 development environment. > Design, debug & build mobile apps & 2D/3D high-impact games for multiple > OSs. > http://pubads.g.doubleclick.net/gampad/clk?id=254741911&iu=/4140 > _______________________________________________ > Sasview-users mailing list > Sasview-users at lists.sourceforge.net > https://lists.sourceforge.net/lists/listinfo/sasview-users > -------------- next part -------------- An HTML attachment was scrubbed... URL: From butlerpd at ...4... Mon Nov 30 20:56:24 2015 From: butlerpd at ...4... (Paul Butler) Date: Mon, 30 Nov 2015 20:56:24 -0500 Subject: [Sasview-users] CoreShellBicelle Model help In-Reply-To: <20151130195809.12544x2l7l18j1us@...15...> References: <20151130195809.12544x2l7l18j1us@...15...> Message-ID: In short, as I understand your questions the answer is yes. Actually there is no requirement that L>R. L is defined as along the axis and R is the radially symmetric dimension. Indeed with L>>R it would be considered a long rod while L wrote: > Dear Users > > Can anyone provide some help on the CoreShellBicelle Model (1D > version) developed in SasView and referring to the documentation below? > > > http://www.sasview.org/docs/user/models/model_functions.html#coreshellbicellemodel > > The following is not clear to me: > > 1) It is said that that the CoreShellBicelle Model is developed on the > basis of the CoreShell Cylinder. I suppose that what it means is that > if one squeezes a cylinder in its length (Radius>>Length), one obtains > a bicelle morphology from a cylinder. However, in the Bicelle standard > parameters, it is the contrary, Length (400)>>Radius(20). Is this > normal? > > > 2) In the CoreShellCylinder model, the Shell surrounds the Core in the > axial direction, parallel to the length of the cylinder, as shown in > > http://www.sasview.org/docs/user/models/model_functions.html#coreshellcylindermodel > > Now, if I "squeeze" the cylinder in its length to make it a bicelle, I > suppose that the shell will then correspond to the Rim Thickness of > the bicelle. Is this correct? Or I did not figure this out at all in > the rigth way and the Shell of the cylinder actually corresponds to > the Face Thickness? > > Thank you very much for your help. > > Niki > > ---------------------------------------------------------------- > This message was sent using IMP, the Internet Messaging Program. > > > > > ------------------------------------------------------------------------------ > Go from Idea to Many App Stores Faster with Intel(R) XDK > Give your users amazing mobile app experiences with Intel(R) XDK. > Use one codebase in this all-in-one HTML5 development environment. > Design, debug & build mobile apps & 2D/3D high-impact games for multiple > OSs. > http://pubads.g.doubleclick.net/gampad/clk?id=254741911&iu=/4140 > _______________________________________________ > Sasview-users mailing list > Sasview-users at lists.sourceforge.net > https://lists.sourceforge.net/lists/listinfo/sasview-users > -------------- next part -------------- An HTML attachment was scrubbed... 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